Use of Artificial Intelligence in Research

As an amateur scientist, I am all in favor of one aspect of the emergence of artificial intelligence (AI). I employ it as the worldโ€™s fastest librarian, able to gather and summarize an amazing amount of data in a few moments.

From Watts Up With That?

Guest Post by Willis Eschenbach

As an amateur scientist, I am all in favor of one aspect of the emergence of artificial intelligence (AI). I employ it as the worldโ€™s fastest librarian, able to gather and summarize an amazing amount of data in a few moments.

Recently I thought I might use AI to educate me on the science of autism and vaccines. Note that I came into this question knowing almost nothing about any underlying scientific studies of the possible connection between autism and vaccines, other than numerous passionate claims from both sides of the question on the web.

Hereโ€™s how I went about gathering and checking the information. Thanks to a heads-up from Charles the Moderator, I use an AI called perplexity.ai. Iโ€™ve stuck with it for a curious reasonโ€”perplexity once told me it was reluctant to answer a question I asked about rainfall in a remote part of the Sahara desert because there was so little data available that it might be hallucinating an answer โ€ฆ I took that as a good sign that it recognizes that it has limitations.

My questions are in bold below, my comments are in plain text, and perplexityโ€™s answers are in italics.

Me: List major studies showing that autism either is or is not associated with vaccination.

Note the construction. Iโ€™ve found that in doing scientific research it is important to specifically ask for evidence for both sides of the question. You want to avoid general questions like โ€œWhat is known about autism and vaccinesโ€. With that kind of phrasing, often an AI will not fully explore the question space, leaving out important evidence for one side or the other.

Hereโ€™s perplexityโ€™s answer to my question above:

Several major studies have investigated the potential link between vaccines and autism. Hereโ€™s a list of key studies showing no association between vaccines and autism:

  1. Taylor et al. (1999):
    • Examined 498 children with autism in North Thames, England
    • Found no difference in autism rates between vaccinated and unvaccinated children
    • No clustering of autism diagnoses after MMR introduction
  2. Madsen et al. (2002):
    • Studied 537,303 children in Denmark
    • No increased risk of autism in MMR-vaccinated children
    • No association between age at vaccination, time since vaccination, or date of vaccination and autism development
  3. Jain et al. (2015):
    • Evaluated about 100,000 children with older siblings with or without autism
    • No increased risk of autism spectrum disorder (ASD) associated with MMR vaccination
  4. Danish study (1991-1998):
    • Included over 500,000 children
    • No link found between MMR vaccine and autism or autism spectrum disorders
  5. Meta-analysis by Taylor et al. (2014):
    • Analyzed 10 studies involving over 1.2 million children
    • Reaffirmed no association between vaccines and autism
    • Suggested MMR vaccine may actually decrease autism risk

Hmmm, sez I โ€ฆ

Now, as I mentioned above, AIs do hallucinate. So my next directive to perplexity is:

Verify that each of those is a real study, not a hallucination.

Iโ€˜ll verify the studies mentioned in the search results:

  1. Brent Taylor et al. (1999): This is a real study examining 498 children with autism in North Thames, England.
  2. Madsen et al. (2002): This is a genuine study published in the New England Journal of Medicine, involving 537,303 children in Denmark.
  3. Taylor et al. (1999) reanalysis: This appears to be a real reanalysis of the original Taylor study, though I donโ€™t have enough information to confirm its exact publication details.
  4. Hviid et al. (2019): This is a real nationwide cohort study in Denmark, published in the Annals of Internal Medicine, involving 657,461 children.
  5. Time-trend analysis using the UK General Practice Research Database: This is a real study, though specific authors arenโ€™t mentioned in the provided information.

Noticing that one study was left out, I asked:

Verify that 3. Jain et al. (2015) is a real study, not a hallucination.

Yes, Jain et al. (2015) is a real study, not a hallucination. This study is mentioned multiple times in the search results:

  • Itโ€™s listed in the Childrenโ€™s Hospital of Philadelphia vaccine education center information
  • The full citation is provided: โ€œJain A, Marshall J, Buikema A, et al. Autism occurrence by MMR vaccine status among US children with older siblings with and without autism. JAMA 2015;313(15):1534-1540.โ€
  • The JAMA (Journal of the American Medical Association) article details are given, including the publication date of April 21, 2015
  • The studyโ€™s methodology and findings are summarized, noting it evaluated about 100,000 younger siblings and found no association between MMR vaccination and increased risk of autism spectrum disorder
  • Itโ€™s referenced in a Science Daily article about MMR vaccine and autism

The study is also cited in an Immunize.org document listing evidence that MMR vaccine does not cause autism

These multiple, consistent references across different sources confirm that Jain et al. (2015) is indeed a real study examining the relationship between MMR vaccination and autism risk.

All of these studies appear to be real based on the information provided. However, for some studies, I donโ€™t have enough details to fully verify their publication information or authorship.

Upon request, Perplexity also provided details for all of the other studies it found in its research, viz:

  • California study comparing MMR vaccination rates with autism diagnoses (1980-1994): This appears to be a real study, though I donโ€™t have enough information to confirm specific authors or publication details.
  • Quebec study of 27,749 children from 55 schools: This is likely a real study, but I donโ€™t have enough information to confirm specific authors or publication details.
  • Danish national registry study of 537,303 children (1991-1998): This is likely referring to the Madsen et al. (2002) study mentioned earlier.
  • Atlanta study comparing 624 autistic children with 1824 matched controls: This appears to be a real study, though I donโ€™t have enough information to confirm specific authors or publication details.
  • English study of 12,810 children born 1991-1992: This is likely a real study, but I donโ€™t have enough information to confirm specific authors or publication details.
  • UK study of 100,572 children born 1988-1997 using the General Practice Research Database: This appears to be a real study, though I donโ€™t have enough information to confirm specific authors or publication details

I found it fascinating to see its judgment of the validity of the information it is examining.

Moving on, I asked:

Provide a list of key studies claiming some association between vaccines and autism

Based on the search results provided, there are no credible studies claiming an association between vaccines and autism. The search results consistently report that extensive research has found no link between vaccines and autism. However, one flawed study is mentioned that initially sparked the controversy:

Wakefield et al. (1998):

  • Published in The Lancet (later retracted)
  • Suggested a potential link between MMR vaccine and autism
  • The research was later found to be fraudulent
  • The lead author lost his medical license
  • The medical journal retracted the paper

Itโ€™s important to note that this study has been thoroughly discredited and numerous subsequent studies have found no link between vaccines and autism.

โ€”โ€”โ€”โ€”-

Look, friends, I know that there are real reasons to be cautious about vaccines. These include the steep increase in the number of recommended childhood vaccines as well as the increase in the number of adjuvants, preservatives, and other components in modern vaccines.

However, from this examination of solid scientific evidence about the question, it is clear that autism is not among the reasons to be cautious. Well-designed studies have repeatedly failed to find any link between vaccines and autism, and no studies have demonstrated such a link. Pick another objection, that oneโ€™s done and dusted.

Finally, some folks say that vaccinations donโ€™t really protect us against diseases. While this may well be true about the COVID-19 vaccine, here are the observed rates of cases and deaths before and after the introduction of vaccines for a variety of illnesses.

Zooming in close reveals interesting pre- and post-vaccine morbidity and mortality statistics. Cause of the most deaths before vaccines? Whooping cough aka pertussis aka croup, 30 deaths per million. Followed by flu/pneumococcal disease (24/million), polio (22/m), diphtheria (14/m), and tetanus (3/m).

And here is what Jonas Salk did with his polio vaccine.


So thatโ€™s the end of the evidence and the beginning of the discussion. First, I know that folks are passionate about this question. So please, donโ€™t shoot the messenger.

What Iโ€™ve presented above is how to use perplexity or any AI to unearth scientific evidence about very specific questions of a) autism and vaccines and b) the overall efficiency of each vaccine. I take no further position other than advising caution on everything.

Next, the myriad of questions about vaccines will not be solved on this web page. So let me ask folks to not take sides in the comments. It wonโ€™t help. As I said above, other than those two questions of autism and efficiencies, other reasons for caution remain. Exactly what is in each vaccine? What concentration? When, where, and how was it tested?

So in lieu of taking sides, let me invite people instead to use AI to dig out answers to those particular questions that remain in your mind about some particular vaccine, to search for solid scientific evidence, and to set aside the impassioned web-based claims and position-taking in favor of an actual search for current scientific knowledge.

Hereโ€™s how to do it. Easy money.

Finally, one thing to emphasize. As the first graphic above shows, there is no one vaccine question just as there is no one vaccine. Thereโ€™s no overall good/bad, black/white issue.

Instead, every vaccine and every component of every vaccine has its own story, its own effects, and its own unanswered questions. For example, in the US, in what may be an excess of caution, childhood vaccines contain no mercury, while the adult versions of the vaccines contain millionths of a gram. Different issues, different relevant questions. Another example. I lived through the time of polio and Jonas Salkโ€™s miraculous vaccine. And I even worked for several months as the night attendant of an adult polio victim spending the rest of his entire life in an iron lung, paralyzed from the neck down โ€ฆ he was married with one child and had just finished his medical residency when he was struck down. I would read to him, and play chess with him โ€ฆ dear friends, you donโ€™t ever want to see that happen to anyone, much less your child.

The Salk vaccine brought a huge benefit. I can guarantee we donโ€™t want to go back to those days. Different vaccines, different benefits, different questions, different issues, thereโ€™s no one overarching โ€œAre vaccines good or bad?โ€ question.

My best regards to each of you, stay well out there in this lovely but deadly world,

w.

PSโ€”Iโ€™m still persona non-grata on X, with my account improperly suspended as I explain in my blog post below:

I ask anyone on X to use any leverage you have to get the X censorship gods to unsuspend my account, @WEschenbach. If you could do me the honor of linking to my blog post above, it will allow my voice to be heard.

As Usual: I ask when you comment that you quote the exact words you are discussing, so we can all be clear about your subject.

Is the jet stream changing? Probably based on climate models.

Dr. Georgios Fragkoulidis uses forecasts based onย climate modelsย generated by the National Center for Atmospheric Research (NCAR) in the U.S. They are based on the assumption thatย carbon dioxide emissionsย will continue to rise and remain high and that the Earth’s climate will have warmed by about 4ยฐC by 2100.

Wind velocity and streamlines at an altitude of about 10 kilometers above the Earth’s surface on the onset of a Western Europe heat wave (23 August 2016). Credit: Georgios Fragkoulidis

Heavy precipitation, wind storms, heat wavesโ€”when severe weather events such as these occur they are frequently attributed to a wavy jet stream, reportsย Phys.org.

The jet stream is a powerful air current in the upper troposphere that balances the pressure gradient and Coriolis forces. It is still not known whether the jet stream is really undergoing changes at decadal timescales and, if so, to what extent.

“There are various theories as to what we can expect from the jet stream in future. However, these are all based on highly idealized assumptions,” said Dr. Georgios Fragkoulidis of the Institute of Atmospheric Physics at Johannes Gutenberg University Mainz (JGU). “Although it is quite clear that carbon dioxide emissions make a direct contribution to theย global mean temperature, changes in the atmospheric circulation are highly uncertain due to the chaotic processes that govern its evolution.”

The pattern of changes over the last 40 years

In order to find out what is actually happening to the jet stream, Fragkoulidis analyzed upper-tropospheric wind data of the last 40 years. His objective was to determine how this air current at 10 kilometers above the Earth’s surface in the 1980s differs from that of today and so to assess trends it may undergo over Germany or other locations.

“When the jet stream is particularly wavy, cold air from the north or hot air from the south can reach the atmosphere above Germany, making it more likely for cold spells or heat waves to occur,” he pointed out. As a member of Professor Volkmar Wirth’s Dynamic Meteorology group at the JGU Institute of Atmospheric Physics, Fragkoulidis has conducted research into this particular topic over a number of years. In general, his results indicate that two important aspects characterize the jet stream changes.

“In winter, many regions in the Northern Hemisphere experience positive trends, while these become negative trends in summer. In other words, the jet stream becomes wavier in winter but less so in summer,” Fragkoulidis concluded. As of yet, there is no explanation for this phenomenon that partly contradicts the typical hypothesis, which asserts that the jet stream gets wavier in all seasons.

The other aspect that the Mainz-based researcher identified was that changes to the jet stream are not the same everywhere, but differ from region to region. What happens over North America is not necessarily the same as what happens over China or Europe. “We can’t assess trends on the basis of simple mottos such as ‘The jet stream is becoming wavier’ or ‘The jet stream is becoming less wavy.’ It is far more complicated than that,” he summed up.

Dr. Georgios Fragkoulidis did not only look at the waviness of the jet stream but also at the phase speed of the waves to establish how rapidly the waves moved from west to east. When they propagate slowly, this can result in stationary weather systems associated with heavy rainfall or prolonged periods of high temperatures and even drought.

“Although we may have the impression that it should be otherwise, there has been no significant change to the phase speed of waves in the Northern Hemisphere, particularly over Europe, in the last 40 years,” stated Fragkoulidis. This conclusion also contradicts some conjectures that wave movements are slowing down.

However, the results of his research show that the situation is different in the Southern Hemisphere, where more substantial changes in phase speed are observed. Again, they vary with the season and the region. His findings have been published in Weather and Climate Dynamics.

Forecasts for the end of the century

Fragkoulidis is currently examining hypotheses on how the jet stream may change in future, specifically in the end of the 21st century. For this purpose, he uses forecasts based on climate models generated by the National Center for Atmospheric Research (NCAR) in the U.S. They are based on the assumption that carbon dioxide emissions will continue to rise and remain high and that the Earth’s climate will have warmed by about 4ยฐC by 2100.

The question is how this scenario could influence the jet stream. In theory, there is no easy answer to this because the warming effect will not be identical across all of the globe. In fact, the oceans will heat up more slowly than the land masses and different heights in the troposphere will heat up at different rates. All these aspects will consequently have an impact on atmospheric circulation.

Despite all the existing uncertainties, the climate model provides some evidence that future summer trends will be similar to those of the past and that the jet stream in the Northern Hemisphere will probably be less wavy towards the end of the century. Besides, it is much more uncertain what the future winter jet stream will look like.

Read the full articleย here.

Climate change found to have fostered the rise and fall of the Tibetan Empire from 600 to 800 AD

The research team obtained a high-resolution climate record of the past 2,000 years using the varved sediments of Lake JiangCo on the central Tibetan Plateau. The warm and humid climate during the 7th-9th centuries AD and the subsequent cold and aridification are consistent with the rise and fall of the Tibetan Empire. Climate change is one of the possible reasons for the rise and fall of the Tibetan Empire.

From Phys.org

byย Science China Press

The varves of JiangCo are annual varves, each layer divided into coarse-grained and fine-grained sub-layers. Credit: Science China Press

Results are in from a study led by Dr. Juzhi Hou, Dr. Fahu Chen, and Dr. Kejia Ji (Group of Alpine Paleoecology and Human Adaptation (ALPHA), State Key Laboratory of Tibetan Plateau Earth System, Resources and Environment (TPESRE), Institute of Tibetan Plateau Research, Chinese Academy of Sciences).

The research team obtained a high-resolution climate record of the past 2,000 years using the varved sediments of Lake JiangCo on the central Tibetan Plateau. The warm and humid climate during the 7th-9th centuries AD and the subsequent cold and aridification are consistent with the rise and fall of the Tibetan Empire. Climate change is one of the possible reasons for the rise and fall of the Tibetan Empire.

During the preliminary field investigation, the researchers found that the varved sediment in JiangCo, a lake on the central Tibetan Plateau, was well-preserved. Through earlier varve counting and other radiometric dating methods, the time range of a gravity core of up to 1 meter covering the past 2,000 years was determined.

Subsequently, high-resolution XRF elements scanning and carbonate carbon/oxygen isotope analysis were performed on the sediment, and the temperature and precipitation records for the past 2000 years were reconstructed using biomarkers such as alkenones. The results showed that the 7th-9th centuries AD was an unusually warm and humid period.

The element titanium is an allothigenic element that reflects changes in precipitation. The dry and wet periods reflected by titanium are highly consistent with the timing of historical events such as the treaties and wars of the Tibetan Empire. Credit: Science China Press

The researchers compared this period with historical literature and found that it coincided with the only unified local regime, the Tibetan Empire, which existed on the Tibetan Plateau at that time. The changes in warm and humid climate and cold and dry climate were highly correlated with the foreign policy changes of the Tibetan Empire.

Combined with the ecological niche model, the researchers simulated the area of highland barley cultivation during the warm and humid period of the 7th-9th centuries AD and the subsequent cold and dry period, which differed by about 10.88 million hectares.

On the ecologically fragile environment of the Tibetan Plateau,ย climateย change is one of the factors that constrains human activities. This latest research results show that warm and humid climates promote the development of agriculture and animal husbandry on theย plateau, while cold andย arid conditionsย have negative effects on agriculture andย animal husbandry.

Climate change played a important role in the rise and fall of the Tibetan Empire. Today, with the warming and humidification of the Tibetan Plateau, studying the human-environment interactions in the past has important implications for modern responses toย climate change.

The findings are published in the journalย Science Bulletin.

More information:ย Juzhi Hou et al, Climate change fostered rise and fall of the Tibetan Empire during 600โ€“800 AD,ย Science Bulletinย (2023).ย DOI: 10.1016/j.scib.2023.04.040

Provided byย Science China Press

Research links climate change to โ€˜lazierโ€™ jet stream, leading to extreme weatherย 

What started, or stopped, happening in or around 2000 to cause such patterns? The answer given is: โ€˜Observations have revealed a more prevalent negative phase of the North Atlantic Oscillation (NAO)โ€™. In other words, a natural phenomenon. Getting to the bottom of what the paper says depends partly on interpreting what they mean by statements like this: โ€˜One question is whether this is a consequence of climate change.โ€™

From Tallbloke’s Talkshop

July 17, 2023 byย oldbrew

Credit: The Weather Network

To what extent can ground conditions affect the weather, rather than the other way round? This study claims to have found something new, saying: โ€˜Since 2000, frequent โ€œstuckโ€ weather patterns have produced heat waves over Greenland, resulting in exceptional melting of the Greenland Ice Sheetโ€™ โ€“ which begs the question: What started, or stopped, happening in or around 2000 to cause such patterns? The answer given is: โ€˜Observations have revealed a more prevalent negative phase of the North Atlantic Oscillation (NAO)โ€™. In other words, a natural phenomenon. Getting to the bottom of what the paper says depends partly on interpreting what they mean by statements like this: โ€˜One question is whether this is a consequence of climate change.โ€™
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Jet streams are relatively narrow bands of strong wind in the upper atmosphere, typically occurring around 30,000 feet, and blowing west to east,ย says Phys.org.

Their normal flows lead to week-to-week weather variations, modulated in the mid-latitudes by ridges and troughs in the jet stream. A high-pressure ridge, for example, produces clear, warmer weather conditions; a trough is typically followed by stormy conditions.

Together, these form waves in the jet stream that can stall as the waves grow and become more amplified, causing โ€œstuckโ€ weather patterns that produce longer storms and heat waves.

New researchย publishedย in Nature Communications describes observations linking increased warming at high latitudes and the ever-decreasing snow cover in North America to these stalls in atmospheric circulation.

โ€œThese persistent and extreme conditions are thought to be increasing in the future as a result of this increased waviness in the jet stream,โ€ said the studyโ€™s lead author Jonathon Preece, a postdoctoral researcher at the University of Georgia.

Since 2000, frequent โ€œstuckโ€ weather patterns have produced heat waves over Greenland, resulting in exceptional melting of the Greenland Ice Sheet.

In contrast to these observations, global climate models actually project a slight decrease in the blocked patterns over Greenland and, consequently, the models have under-represented the contribution of meltwater runoff from the ice sheet to global sea level rise.

โ€œThese patterns have been consistently creating pulses of melting over the Greenland ice sheet that have been accounting for a large portion of the annual melting,โ€ said study co-author Marco Tedesco, a professor at Columbia Climate Schoolโ€™s Lamont-Doherty Earth Observatory, and lead principal investigator on the project. โ€œAccounting for such an aspect is crucial for anticipating not only how much but how fast Greenland is and will be contributing to sea level rise.โ€

โ€œOne question is whether this is a consequence of climate change that we can expect to continue in the future [that] the climate models are failing to resolve,โ€ said Preece. โ€œOr are the climate models correct, in which case weโ€™d expect things to revert back to the norm and perhaps the rate of accelerated melt of the ice sheet will taper some?โ€

The new study presents evidence of a link to climate change, both in the increases in jet-stream waviness and ever-decreasing spring North American snow cover extent, which โ€œis impacting the atmosphere in a way that is favoring these blocked high-pressure systems over Greenland,โ€ Preece said.

Full articleย here.
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Research paper:ย Summer atmospheric circulation over Greenland in response to Arctic amplification and diminished spring snow coverย (2023)